Issues

• LogAnalyser converting true/false columns by order of appearance

  CompEvol/beast3#177 · Filter by author EvaLiyt opened on Oct 1, 2026

• IntRandomWalkOperator does not support scalars

  enhancement
  CompEvol/beast3#174 · Filter by author NicoNeureiter opened on Sep 29, 2026
  

• AVMN operator can no longer include trees in its joint proposal

  bug
  CompEvol/beast3#173 · Filter by author NicoNeureiter opened on Sep 24, 2026
  

• Add nightly CI workflow for slow-tagged Beauti tests

  enhancement
  CompEvol/beast3#147 · Filter by author walterxie opened on Aug 17, 2026
  1

• GTR substitution model rates should default to a Dirichlet prior in beauti

  CompEvol/beast3#146 · Filter by author jordandouglas opened on Aug 15, 2026
  1

• XML converter

  enhancement
  CompEvol/beast3#90 · Filter by author walterxie opened on May 13, 2026
  1

• Propose PackageManager to recognise Maven dependency XML in CBAN

  enhancement
  CompEvol/beast3#87 · Filter by author walterxie opened on May 13, 2026

• In-app BEAST core update notifier (read latest release tag)

  enhancement
  CompEvol/beast3#85 · Filter by author alexeid opened on May 11, 2026

• v2.7→v2.8 parity: verify install-from-source via Maven (replaces ant install)

  enhancement
  CompEvol/beast3#84 · Filter by author alexeid opened on May 11, 2026

• v2.7→v2.8 parity: smoke-test BEAUti File/Set working dir menu

  enhancement
  CompEvol/beast3#83 · Filter by author alexeid opened on May 11, 2026

• v2.7→v2.8 parity: integration test for AppLauncher + version.xml (Maven packages)

  enhancement
  CompEvol/beast3#82 · Filter by author alexeid opened on May 11, 2026

• v2.7→v2.8 parity: automated Linux and Windows release builds

  enhancement
  CompEvol/beast3#81 · Filter by author alexeid opened on May 11, 2026

• v2.7→v2.8 parity: package upgrade support (BEAST.base, BEAST.fx, installed packages)

  enhancement
  CompEvol/beast3#80 · Filter by author alexeid opened on May 11, 2026

• Misleading tip text for scaleFactor input of AbstractScale

  CompEvol/beast3#79 · Filter by author tgvaughan opened on May 8, 2026

• IntegerListInputEditor fails on shape input for RealVectorParam (BEAUti)

  CompEvol/beast3#77 · Filter by author tgvaughan opened on May 7, 2026

• Rate Parameter Types

  CompEvol/beast3#68 · Filter by author tochsner opened on Apr 21, 2026
  1

• Deprecate BranchRateModel.Base to avoid type shadowing with spec Base

  CompEvol/beast3#67 · Filter by author NicoNeureiter opened on Apr 16, 2026

• UCRelaxedClockModel: Make rateDistInput covariant in the scalar distribution

  CompEvol/beast3#64 · Filter by author tochsner opened on Apr 9, 2026
  1

• Setup guide for Developers

  documentation
  CompEvol/beast3#63 · Filter by author walterxie opened on Apr 9, 2026

• BEAUti is suppressing error messages related to strong typing

  CompEvol/beast3#54 · Filter by author jordandouglas opened on Mar 31, 2026

• Gamma distribution parameterisation

  CompEvol/beast3#49 · Filter by author jordandouglas opened on Mar 26, 2026

• Trace utilities no longer available to downstream packages after Maven migration

  CompEvol/beast3#42 · Filter by author alexeid opened on Mar 10, 2026
  3

• Delete old GitHub Packages under io.github.alexeid groupId

  CompEvol/beast3#41 · Filter by author alexeid opened on Mar 1, 2026
  

• Support Maven Central as package distribution mechanism

  CompEvol/beast3#40 · Filter by author alexeid opened on Mar 1, 2026

• Publish BEAST 3 artifacts to Maven Central

  CompEvol/beast3#39 · Filter by author alexeid opened on Feb 28, 2026