diff --git a/coolbox/core/track/bam.py b/coolbox/core/track/bam.py
index 7a2c174..63c3994 100644
--- a/coolbox/core/track/bam.py
+++ b/coolbox/core/track/bam.py
@@ -85,3 +85,7 @@ def plot_align(self, ax, gr: GenomeRange):
             with_ruler=False,
             draw_line=False
         )
+
+        if 'orientation' in self.properties and self.properties['orientation'] == 'inverted':
+            ymin, ymax = ax.get_ylim()
+            ax.set_ylim(ymax, ymin)