Skip to content

Is Wasserstein Discriminant Analysis usable for non-toy datasets? #717

Description

@dherrera1911

I am trying to use the Wasserstein Discriminant Analysis implementation of POT, shown here https://pythonot.github.io/auto_examples/others/plot_WDA.html

I can reproduce the example in the link above with no problem. However, when I tried to apply the WDA implementation to MNIST, it doesn't complete any iterations and then the process is killed. In the original paper the authors use the method for MNIST, and report a low training time. So, I was wondering, whether this implementation is known not to work for larger scale data, or if I am missing something.

Code to reproduce below:

import torch
import torchvision

# Download and load training and test datasets
trainset = torchvision.datasets.MNIST(root='./data', train=True, download=True)

# Scale data and subtract global mean
def scale_and_center(x_train):
    std = x_train.std()
    x_train = x_train / (std * n_row)
    global_mean = x_train.mean(axis=0, keepdims=True)
    x_train = x_train - global_mean
    return x_train

n_samples, n_row, n_col = trainset.data.shape
n_dim = n_row * n_col
x_train = trainset.data.reshape(-1, n_dim).float()
y_train = trainset.targets

from sklearn.decomposition import PCA
pca = PCA(n_components=6)
pca.fit(x_train)
pca_filters = pca.components_


from ot.dr import wda

Pwda, projwda = wda(x_train.numpy(), y_train.numpy(), p=6, reg=0.01,
                   P0=pca_filters.T)

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions