diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..5b6a065 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +.Rproj.user +.Rhistory +.RData +.Ruserdata diff --git a/Exercises/2_Simple_Package/DESCRIPTION b/Exercises/2_Simple_Package/DESCRIPTION index ff5de27..c08cc23 100644 --- a/Exercises/2_Simple_Package/DESCRIPTION +++ b/Exercises/2_Simple_Package/DESCRIPTION @@ -9,7 +9,6 @@ Description: Lee-Seung non-negative matrix factorization for gene-by-sample License: MIT + file LICENSE Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.2 Depends: R (>= 4.1.0) Suggests: knitr, @@ -18,3 +17,4 @@ Suggests: VignetteBuilder: knitr Config/testthat/edition: 3 Config/Needs/website: r-lib/pkgdown +Config/roxygen2/version: 8.0.0 diff --git a/Exercises/2_Simple_Package/man/bionmf-package.Rd b/Exercises/2_Simple_Package/man/bionmf-package.Rd index ec8394f..d843579 100644 --- a/Exercises/2_Simple_Package/man/bionmf-package.Rd +++ b/Exercises/2_Simple_Package/man/bionmf-package.Rd @@ -11,5 +11,10 @@ Lee-Seung non-negative matrix factorization for gene-by-sample expression matric \author{ \strong{Maintainer}: Adrien Osakwe \email{adrien.osakwe@mail.mcgill.ca} +Authors: +\itemize{ + \item Adrien Osakwe \email{adrien.osakwe@mail.mcgill.ca} +} + } \keyword{internal} diff --git a/Exercises/3_Actions_Package/R/nmf_fit.R b/Exercises/3_Actions_Package/R/nmf_fit.R index c6ad331..7e70122 100644 --- a/Exercises/3_Actions_Package/R/nmf_fit.R +++ b/Exercises/3_Actions_Package/R/nmf_fit.R @@ -5,7 +5,7 @@ #' @param seed Optional random seed for reproducibility. #' @return List with components `W` and `H`. #' @keywords internal -initialize_nmf <- function(V, k, seed = NULL) { +initialize_nmfx <- function(V, k, seed = NULL) { if (!is.null(seed)) { set.seed(seed) }