Hi, I was wondering how is the tRNAscan output filtered. I noticed that for my genomes some of the tRNAs have the Note of "pseudo" in the .out file in the predict_misc folder, and those are included in the gff3 file generated after the prediction.
I checked the trnascan2gff3.pl script and it seems that it should be filtering sequences with length > 150, those with the note "Pseudo", "Sup" or "Undet". I think that it should be removing those noted as pseudo, but it looks specifically the word "Pseudo"?
I would appreciate a clarification in case I'm missing something.
Thanks.
Hi, I was wondering how is the tRNAscan output filtered. I noticed that for my genomes some of the tRNAs have the Note of "pseudo" in the .out file in the predict_misc folder, and those are included in the gff3 file generated after the prediction.
I checked the trnascan2gff3.pl script and it seems that it should be filtering sequences with length > 150, those with the note "Pseudo", "Sup" or "Undet". I think that it should be removing those noted as pseudo, but it looks specifically the word "Pseudo"?
I would appreciate a clarification in case I'm missing something.
Thanks.