Skip to content

Navigation Menu

Appearance settings

BCCDC-PHL

- AI CODE CREATION
  GitHub CopilotWrite better code with AI
  GitHub Copilot appDirect agents from issue to merge
  MCP Registry^NewIntegrate external tools
- DEVELOPER WORKFLOWS
  ActionsAutomate any workflow
  CodespacesInstant dev environments
  IssuesPlan and track work
  Code ReviewManage code changes
- APPLICATION SECURITY
  GitHub Advanced SecurityFind and fix vulnerabilities
  Code securitySecure your code as you build
  Secret protectionStop leaks before they start
- EXPLORE
  Why GitHub
  Documentation
  Blog
  Changelog
  Marketplace
View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

31 followers
Vancouver, BC
http://www.bccdc.ca/publichealthlab

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

ncov2019-artic-nf ncov2019-artic-nf Public

Forked from connor-lab/ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Nextflow 4 1
illumina-uploader illumina-uploader Public

Watch for new files in Illumina sequencer and upload to remote server

Python 4 1
mpxv-artic-nf mpxv-artic-nf Public

Nextflow 3 4
covid-qc covid-qc Public

Static site for displaying COVID-19 sequencing quality control data

Clojure 5

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C Clojure Dockerfile HTML Java JavaScript Jupyter Notebook Nextflow Perl Python

Sort

Select order

Last updated Name Stars

Showing 10 of 138 repositories

auto-ncov Public
Automated genomic analysis of SARS-CoV-2 sequence data

BCCDC-PHL/auto-ncov’s past year of commit activity

Python 1 0 4 1 Updated Jun 22, 2026
routine-sequence-qc-site Public
A site for displaying routine sequence QC data

BCCDC-PHL/routine-sequence-qc-site’s past year of commit activity

Clojure 0 AGPL-3.0 0 0 0 Updated Jun 20, 2026
auto-illumina-run-qc-check Public
Automated Primary Sequence QC Checks for Illumina Sequencing Runs

BCCDC-PHL/auto-illumina-run-qc-check’s past year of commit activity

Python 1 0 0 0 Updated Jun 19, 2026
auto-hcv Public
Automated genomic analysis of HCV sequence data

BCCDC-PHL/auto-hcv’s past year of commit activity

Python 0 MIT 1 0 0 Updated Jun 19, 2026
symlink-seqs Public
Create fastq symlinks for selected samples in sequencer output directories based on several criteria

BCCDC-PHL/symlink-seqs’s past year of commit activity

Python 0 0 0 0 Updated Jun 18, 2026
routine-sequence-qc-collector Public
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site

BCCDC-PHL/routine-sequence-qc-collector’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jun 17, 2026
routine-sequence-qc Public
Pipeline for running routine quality control analyses on illumina sequence data

BCCDC-PHL/routine-sequence-qc’s past year of commit activity

Python 1 3 8 0 Updated Jun 16, 2026
determinator Public
Sort fastqs or split reads based on competitive mapping to multiple references through bwa or bbsplit

BCCDC-PHL/determinator’s past year of commit activity

Nextflow 0 0 0 0 Updated Jun 16, 2026
auto-routine-sequence-qc Public

BCCDC-PHL/auto-routine-sequence-qc’s past year of commit activity

Python 0 0 1 0 Updated Jun 16, 2026
auspice Public Forked from nextstrain/auspice
Web app for visualizing pathogen evolution

BCCDC-PHL/auspice’s past year of commit activity

JavaScript 0 AGPL-3.0 175 0 0 Updated Jun 15, 2026

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.