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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 14

  2. lyra lyra Public archive

    Agentic primative repository

    Python 11 3

  3. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 10 1

  4. Segment-Flow Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    Python 9 4

  5. introduction-to-image-analysis introduction-to-image-analysis Public

    Forked from RMS-DAIM/introduction-to-image-analysis

    Jupyter Notebook 9 5

  6. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 7

Repositories

Showing 10 of 218 repositories
  • CellSurvey Public

    GPU-accelerated Python pipeline for image-based spatial omics, built on Sopa and SpatialData

    FrancisCrickInstitute/CellSurvey's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 30, 2026
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow's past year of commit activity
    Python 9 MIT 4 2 4 Updated Sep 30, 2026
  • Data-Prospector Public

    AI pipeline that explores a dataset from many angles at once - including the ideas that turn out wrong

    FrancisCrickInstitute/Data-Prospector's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 29, 2026
  • K-tag-manuscript Public

    Code for FLASH-seq analysis

    FrancisCrickInstitute/K-tag-manuscript's past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 29, 2026
  • aiod_utils Public
    FrancisCrickInstitute/aiod_utils's past year of commit activity
    Python 1 MIT 1 0 9 Updated Sep 29, 2026
  • Cg1-KO Public

    Code used for data analysis for the Cg1-KO project

    FrancisCrickInstitute/Cg1-KO's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Sep 28, 2026
  • aiod_docs Public

    Documentation for AI OnDemand (AIoD)

    FrancisCrickInstitute/aiod_docs's past year of commit activity
    Python 2 CC-BY-4.0 0 0 0 Updated Sep 28, 2026
  • Image-Analysis-Group Public

    We are the Image Analysis Group at the Francis Crick Institute.

    FrancisCrickInstitute/Image-Analysis-Group's past year of commit activity
    Jupyter Notebook 5 CC-BY-SA-4.0 2 8 0 Updated Sep 28, 2026
  • OmeSliCC Public

    Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)

    FrancisCrickInstitute/OmeSliCC's past year of commit activity
    Python 7 1 0 0 Updated Sep 25, 2026
  • flag-qc Public
    FrancisCrickInstitute/flag-qc's past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Sep 22, 2026
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