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Fix to use ref_seq if specified irrespective of bam_file#14

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pieterlukasse wants to merge 2 commits into
MGHComputationalPathology:masterfrom
ccgd-profile:fix_issue_10
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Fix to use ref_seq if specified irrespective of bam_file#14
pieterlukasse wants to merge 2 commits into
MGHComputationalPathology:masterfrom
ccgd-profile:fix_issue_10

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@pieterlukasse

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Fix for #10

@pieterlukasse

pieterlukasse commented Sep 11, 2020

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@alliemclean this one replaces PR #11

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