CompatHelper: bump compat for Nabla to 0.13, (keep existing compat) - #32

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github-actions[bot] wants to merge 716 commits into

compathelper/new_version/2023-04-13-01-04-08-627-02130006618

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Commits on Jun 7, 2022

checking to see if a no telluric model is preffered
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2d4f9ea
masking out bad component plot points
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6a6f0f0
removing metadata[:todo][:optimized]
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a5104a5

Commits on Jun 8, 2022

adding star_prior() to FrozenTelWorkspace and taking out remove_lm_score_means!() from finalize_scores!()
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0a7b07b
updatde clean_dir
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5b87ec1
use_aic and iter=300
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5e4a55c

Commits on Jun 9, 2022

fixing _spectra_interp_gp!() bug
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a298948
adding eps eri
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1621af1

Commits on Jun 13, 2022

undoing plot mask thing
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de9a603

Commits on Jun 14, 2022

fixing _spectra_interp_gp_div_gp!() bug
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caa36a5

Commits on Jun 16, 2022

whoops
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e4b872b
better airmass visibility in plots
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e5f9b7e
adding score errors, and nicer plots
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22dc83f
adding 22049 to gather
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6dedf86
adding 22049 to reduce.jl and some script cleanup and removing SSOFU._scatter()
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3ab6152
part of last one and adding an auto filter for χ²_orders
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63fca88
adding nice print statements. ~100 orders are used for each analysis
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d5854fd
adding dpca, better inits, and score errors to EXPRES/analysis.jl
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853ac0b
simpified expres param
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902333a

Commits on Jun 17, 2022

cleaning up EXPRES/gather.jl
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committed
4d32391
updating clean_dir.jl
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b0ded1b
sigh
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507be25
ssiigghh
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9e17bfd
whoopsies
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2950f71
more nothing
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e73b74a
fixing standardizing reduce.jl
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163758e

Commits on Jun 21, 2022

adding remove_lm_score_means!() to cb() for Adam models
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7dd3c16
whoops
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8afac86

Commits on Jun 23, 2022

recording random activity indicators and tellurics from L2 files ;)
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68da1e5

Commits on Jun 27, 2022

plotting neid activity indicators and dealing with lm_tel/lm_star error
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916109f

Commits on Jun 28, 2022

only using best Hα
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2f7d0cb
separating out neid_extras()
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af95a09
making frozen tel models stay that way
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4639c06
smol fix
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0110635

Commits on Jun 29, 2022

SSOFUtliities -> SSOFUtilities
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b18fd5b

Commits on Jun 30, 2022

adding neid lsf and only using lsfs on orders with good calibration.
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7d9c689

Commits on Jul 6, 2022

adding flip_basis_vectors!().
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796906e

Commits on Jul 7, 2022

using better fits for expres lsf
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3adfea5
moving lsf functions to modules
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129aae9

Commits on Jul 14, 2022

Commits on Jul 19, 2022

smarter regularization finding strategy, adding compat entry for temporalgps, and taking out mean full model from plots
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0ced3a2
sigh
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7830738
getting EMPCA out
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3f61420

Commits on Jul 21, 2022

Commits on Jul 22, 2022

sigh
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49c86d8
dealing with edge effects and actually culling
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ebd0836
dpca folder
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5cce675
hmm
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fa844c5
separate out empca
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060ccf2

Commits on Jul 25, 2022

new reduce plots
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884d7dc
new neid stars
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ea183f1

Commits on Jul 26, 2022

better plots and automatic σ_floor choice and different testing_ratio
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90fd857
our noreg rvs have been so wrong
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dd7708a

Commits on Jul 29, 2022

experimental commit
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3676140

Commits on Aug 1, 2022

more efficient memory usage in _solve_coeffs!(eigvec::AbstractVector, ...)
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a19c7c4
whoops
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e90c3ec

Commits on Aug 4, 2022

- better bad drift detection
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82d3dc1
wobble-style error estimation
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288120b

Commits on Aug 5, 2022

- adding est_∇()
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7242840
- added update_interpolation_locations!()
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d80a6da
adding update_interpolation_locations!() to _finish_downsizing
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06a3207

Commits on Aug 6, 2022

- fix est_∇() (just use FiniteDifferences.jl)
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b7b62d4
going to more model sampling
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8e10cb3

Commits on Aug 7, 2022

whoops
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e717c22
smol iter fix
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faeac83
errors -> σ
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1335bbb
part of last one
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c27d2be
light_speed_nu -> SSOF.light_speed_nu
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cdff41b

Commits on Aug 8, 2022

boop
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7a8f6f1
σ_floor vs std_floor
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66bafdc

Commits on Aug 9, 2022

smol bits
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e6cf648
moar smol bits
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50553a0

Commits on Aug 12, 2022

more small
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eec08f5

Commits on Aug 15, 2022

hopefully fixing lsf
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5a56824

Commits on Aug 16, 2022

you can use log linear models now this took forever
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b0dca4f
rearranging script args
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c23c19b
new folder structure
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be96b04

Commits on Aug 17, 2022

fixing model init bug
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e4ac777

Commits on Aug 18, 2022

improving estimate_σ_bootstrap
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9a583de
whoops
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ef3273c
whoops2
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810de75
saving more error stuff
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17d4e6f
smol buggy
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44b8b57

Commits on Aug 19, 2022

update gather
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dd8d3fa
looking in the right places
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1fcf1cc
making EMPCA more robust to masked points
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e3b9f14
simpler gather
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07a1631

Commits on Aug 20, 2022

better clean dir and more lenient warning instead of assert in estimate_σ_curvature()
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2da7ff9

Commits on Aug 22, 2022

new file strucutre in reduce
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1a91c37
correct neid order rvs and generalized weighted_mean()
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14074b5

Commits on Aug 23, 2022

fixed neid order RVs, going to linear continuum fits only in really red orders
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78ab943

Commits on Aug 24, 2022

plotting lsf broadened model components
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52e06c9
oop
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acea96a

Commits on Aug 25, 2022

Commits on Aug 28, 2022

adding telluric dominated model initialization
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e2cb088

Commits on Aug 29, 2022

switching to ThreadsX
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e75535c
fixed padding, more masking in initialization, taking out unnecesary plotting of μ_tel
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469489c
oop
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35ee9b5

Commits on Aug 31, 2022

high acceleration pixel masking
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c49cc64
122 -> 118
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7a725f3
acceleration -> snap
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4bcc8f5

Commits on Sep 1, 2022

consistent edge masking, some other continuum tweaks, new data usage plot
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08b52be

Commits on Sep 2, 2022

adding gated_plot!() and adjusting nsigma
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63aae7e
oop
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9730299

Commits on Sep 6, 2022

replacing recognize_bad_normalization!() and recognize_bad_drift!()
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5ed3afc
masking isolated pixels
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a70c00b

Commits on Sep 8, 2022

Commits on Sep 13, 2022

adding use_custom_n_comp and edge masking
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c0aa3fe
oops
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4f9a460
oop2
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0e89b13
should have committed this earlier
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1d29089
better recalc
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acbc1e6
fixing donwsize_model() bugs
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committed
c07b396
scaling scores in plot_model()
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af16f78

Commits on Sep 14, 2022

fixing estimate_σ_curvature()
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595ae9f

Commits on Sep 16, 2022

looked into mcmc and vi (not using either)
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69189a8
adding by eye folder
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bab0ba5
oop
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87d7c27

Commits on Sep 19, 2022

better by-eye folder
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db7d1de

Commits on Sep 21, 2022

adding 95735
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7a42523

Commits on Sep 23, 2022

new lsf_gp analysis algorithm
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6fb5551
oop
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9288372

Commits on Sep 28, 2022

more better flipping
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78798e6
traceable barycentric pixel masking
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91a94e0
augment clean_dir
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e7b26cc
verbose
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3deba75
adding var_s, _mask -> mask!, more verbose
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5b887ff
more consistent var_s behavior, always masking barycentric edges,
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0f94ec8
oop
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8a0f7a5

Commits on Sep 29, 2022

more verbose
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21750aa

Commits on Oct 3, 2022

7:118
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ac5b619

Commits on Oct 4, 2022

better gather
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44e437e

Commits on Oct 5, 2022

more flexible analysis (with better folders and input parsing)
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1674227
oop
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e62c63a
going back on parse_args
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14b45af
can have - in parsed args
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ecbe5a4
cant do parse(::String, ...)
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37ad66f

Commits on Oct 24, 2022

starting to make reduce.jl better, fixed how_many_comps empty string parsing bug, .!isinf -> isfinite, add weighted project_doppler_comp!, adding reorthagonalize to empca_vec_by_vec, ability to spe…
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9d9c1ea

Commits on Oct 28, 2022

Commits on Oct 31, 2022

diagnostic print statement
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23574ce

Commits on Nov 1, 2022

making it easier to find the best constant models
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51b5b5c
more robust calculate_initial_model()
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7399857
oop
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71b0760

Commits on Nov 3, 2022

mostly commented out useless changes
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35e6fe0

Commits on Nov 8, 2022

ugh
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cee1bc8

Commits on Nov 15, 2022

comparing 0,0 to -1,0 model before comparing to -1,1 model and μ_positive=true
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3725056
more git ignore
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fcf5005

Commits on Nov 23, 2022

adding the other metrics and metric plots
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b638f0e

Commits on Nov 30, 2022

eachindex and some script deletion
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41236a2
better gather.jl
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1e1253d

Commits on Dec 1, 2022

reverting some axes bugs & better plot_model_rvs()
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65a2f84

Commits on Dec 5, 2022

wavelength_range_star
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e24c919

Commits on Dec 6, 2022

pls work
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aeae2c4

Commits on Dec 7, 2022

fixing negative var issue
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f0c28a6

Commits on Dec 9, 2022

1d snap & various smol bugs
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f17ece9
careful_first_step
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235cdbb
replacing interp_helper (dumber but works better)
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7b0aa33
save models after error estimation
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a9d7d69
rm_doppler which works too well
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1bcaa0d
speed_up_iterate!()
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0aa7db2
speed up is dangerous and killed CaHK
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6f6074c

Commits on Dec 12, 2022

calc_doppler_component_RVSKL_log and order plots
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acb7f35
Data Usage Plot
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098bf7a
more of last one
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1af53c8

Commits on Dec 15, 2022

std -> RMS, weights -> scores, fixing use_custom_n
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1378191
undef reference bug, spectra_interp_gp bug swerve
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6452a79

Commits on Dec 20, 2022

thing
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ada3c23

Commits on Dec 22, 2022

adding barnard, star_str, more neid data filtering
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0aa2a11
oop
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82cf7db

Commits on Jan 3, 2023

Commits on Jan 6, 2023

moving out EMPCA and some function renaming
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0989522

Commits on Jan 12, 2023

adding docs folder
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144e8d7
Add files via upload
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4f5f87e
Update README.md
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authored
ffd817c
adding workflows and docs basics
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25d9167

Commits on Jan 13, 2023

CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat)
CompatHelper Julia
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cea6703
CompatHelper: add new compat entry for DSP at version 0.7, (keep existing compat)
CompatHelper Julia
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8995299
CompatHelper: add new compat entry for SortFilters at version 0.1, (keep existing compat)
CompatHelper Julia
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7a39b6f
CompatHelper: add new compat entry for Unitful at version 1, (keep existing compat)
CompatHelper Julia
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441c381
CompatHelper: add new compat entry for ExpectationMaximizationPCA at version 0.2, (keep existing compat)
CompatHelper Julia
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60179fc
Merge pull request #28 from christiangil/compathelper/new_version/2023-01-13-01-14-25-255-01734543918
christiangil
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6b08d2c
Merge pull request #27 from christiangil/compathelper/new_version/2023-01-13-01-14-21-700-02185603131
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4e50643
Merge pull request #21 from christiangil/compathelper/new_version/2023-01-13-01-13-59-480-00217928080
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2e55460
Merge branch 'master' into compathelper/new_version/2023-01-13-01-13-56-116-00606789376
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d81e58c
Merge pull request #20 from christiangil/compathelper/new_version/2023-01-13-01-13-56-116-00606789376
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1a976fc
Merge branch 'master' into compathelper/new_version/2023-01-13-01-13-52-609-00211915814
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7af1a7d
Merge pull request #19 from christiangil/compathelper/new_version/2023-01-13-01-13-52-609-00211915814
christiangil
authored
5569618

Commits on Jan 20, 2023

Commits on Jan 23, 2023

simpler rv calc and variable spectra_interp_gp lengthscale
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bdaf96d

Commits on Jan 31, 2023

Update README.md
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authored
ff2533d

Commits on Mar 16, 2023

adding example, DataInterpolations, moving stuff out of SSOFU
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e266d33
adding the project file
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c5fa6ee
adding instantiate
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c4012c8
hacky github fix?
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c7b8456
final hacky github fix
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5dcf9e3
adding gettingstarted.md
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a3ed75c

Commits on Mar 20, 2023

example notebook
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c22d391
continuum docs
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ac33e1e

Commits on Mar 21, 2023

more documentation and a bugfix in trapz_small
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741803f
Update README.md
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41f36ea
picture in docs attempt
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07ae9e7
pic attempt 2
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85094c1

Commits on Mar 29, 2023

way more documentation
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docs yay
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e46379e

Commits on Apr 3, 2023

aicc
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6b84755

Commits on Apr 4, 2023

adding model_functions docstrings
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4c977e6
start to organize documentation and add logo
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ca489d7
Update README.md
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d59951c

Commits on Apr 5, 2023

larger logo
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14995b2

Commits on Apr 6, 2023

rest of documentation
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c3e0e61
oop
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52d191b
fix attempt
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49289b2
making example notebook nicer
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9b0bd02
adding fits files for example
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4a140a0

Commits on Apr 7, 2023

nb
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c2bc56f
some doc fixes
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b2eed25
sigh
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848025b

Commits on Apr 10, 2023

making example independent. prep to sep utilities
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dec7afe

Commits on Apr 11, 2023

removing folders from Git
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b1c7948
and the corresponding git ignore
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5bb4242
adding compat
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1b3bc89

Commits on Apr 12, 2023

CompatHelper: bump compat for SpecialFunctions to 2, (keep existing compat)
CompatHelper Julia
committed
8457a0c
CompatHelper: bump compat for RollingFunctions to 0.7, (keep existing compat)
CompatHelper Julia
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d52a8e0
Merge pull request #31 from christiangil/compathelper/new_version/2023-04-12-01-05-59-310-01639046632
christiangil
authored
8227848
Merge pull request #30 from christiangil/compathelper/new_version/2023-04-12-01-05-51-772-03555233523
christiangil
authored
8a90024

Commits on Apr 13, 2023

CompatHelper: bump compat for Nabla to 0.13, (keep existing compat)
CompatHelper Julia
committed
0ee7d2a