Skip to content

Document connectome neuropil ROIs, region connectivity and the L1 EM template - #518

Merged
Clare72 merged 6 commits into
masterfrom
rois
Sep 30, 2026
Merged

Clare72 merged 6 commits into
masterfrom
rois

Conversation

@Clare72

@Clare72 Clare72 commented Sep 30, 2026

Copy link
Copy Markdown

Summary

  • New Neuropil Regions page (Data/EM/neuropil-regions.md): the ROIs that come with each EM connectome dataset (Hemibrain, MANC, male-CNS, Optic-lobe, FAFB/FlyWire, BANC), where they are sourced from, how they are mapped to FBbt terms, and how they are nested.
  • New Region Connectivity page (Data/EM/region-connectivity.md).
  • Adds the L1 larval CNS ssTEM (Cardona/Janelia) template and its 27 painted domains to the Templates page.
  • Small edits to the EM overview and versioning pages.

Master has been merged in. The Templates page conflicts came from master's switch to https links, which is kept, including in the L1 section.

🤖 Generated with Claude Code

Clare72 and others added 6 commits July 28, 2026 14:14
…FlyBase references and collapsible painted-domain lists

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
# Conflicts:
#	content/en/docs/Data/templates.md
@Clare72
Clare72 merged commit 3ba3fb4 into master Sep 30, 2026
2 checks passed
@Clare72
Clare72 deleted the rois branch September 30, 2026 13:04
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant