Install Instructions

Installing FastProjectR

FastProjectR is currently not hosted on CRAN nor Bioconductor because it is still in development. To install and use the package, first ensure that an R version >= 3.4 is installed and that the package devtools is installed.

To simplify the install process, first run the following command from within an R session whose working direcory is that where the pacakge is located:

  devtools::install(dependencies=T)

This command will automatically try to install all dependencies required by the packages and will in addition attempt to load the package into your R session's namespace. Most likely, however, there will be errors accompanying the installation - these packages that cannot be installed will need to be installed from github and bioconductor. To install the Rtsne.multicore package, use:

devtools::install_github("RGLab/Rtsne.multicore") 

The rest of the packages will most likely need to be installed from Bioconductor using biocLite - use these commands in an R session to install a package from Bioconductor:

source("http://bioconductor.org/biocLite.R")
biocLite(<name of the package>)