Install the Radial Profile plugin before running these macros. This plugin is available at:
https://imagej.nih.gov/ij/plugins/radial-profile.html
If you have trouble running any of these macros, first try updating ImageJ/Fiji.
Some of the functions used in the macros are only available in newer versions.
If you have questions or suggestions for improvements, please email:
bbammes@directelectron.com
Benjamin Bammes, PhD
Director of Research & Development
Direct Electron
To have ImageJ/Fiji load these macros into the Plugins/Macros menu automatically at startup,
copy all macros into the Fiji.app\macros folder and then paste the following code in the
Fiji.app\macros\StartupMacros.fiji.ijm file:
// Start: Direct Electron section
// Add this section before the "About Startup Macros..." line
// in StartupMacros.fiji.ijm
macro "About Direct Electron Macros..." {
title = "About Direct Electron Macros";
text1 = "Direct Electron (directelectron.com) is the technology leader\n"
+ "in direct detection cameras for electron microscopy and other\n"
+ "high-performance scientific cameras.";
text2 = "These macros are provided to assist with common image\n"
+ "processing, camera characterization, and calibration tasks in\n"
+ "ImageJ. These macros are freely available for anyone interested\n"
+ "(regardless of whether they use Direct Electron's cameras).";
text3 = "If you have suggestions or make any changes to these macros,\n"
+ "we kindly ask that you share them with us for the benefit of\n"
+ "the broader scientific community.";
text4 = "Updates to these macros are available on Direct Electron's\n"
+ "GitHub page (https://github.com/directelectron/imagej-macros).";
Dialog.createNonBlocking(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.addMessage(text3);
Dialog.addMessage(text4);
Dialog.show();
}
macro "Coincidence Loss Calculator..." {
if (File.exists("DE_CoincLoss.ijm")) {
runMacro("DE_CoincLoss.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_CoincLoss.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "DQE Curve Calculator..." {
if (File.exists("DE_DQECurve.ijm")) {
runMacro("DE_DQECurve.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_DQECurve.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "DQE0 Calculator..." {
if (File.exists("DE_DQE0.ijm")) {
runMacro("DE_DQE0.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_DQE0.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "False Positives Calculator..." {
if (File.exists("DE_FalsePos.ijm")) {
runMacro("DE_FalsePos.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_FalsePos.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "Magnification Calibration..." {
if (File.exists("DE_MagCal.ijm")) {
runMacro("DE_MagCal.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_MagCal.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "MTF Calculator (from ASI)..." {
if (File.exists("ASI_MTF.ijm")) {
runMacro("ASI_MTF.ijm");
}
else {
title = "Macro Not Found";
text1 = "ASI_MTF.ijm was not found in the macro folder.";
text2 = "Download the macro from Erik Maddox's GitHub page\n"
+ "(https://github.com/emx77/ASI_MTF).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "NNPS Calculator..." {
if (File.exists("DE_NNPS.ijm")) {
runMacro("DE_NNPS.ijm");
}
else {
title = "Macro Not Found";
text1 = "DE_NNPS.ijm was not found in the macro folder.";
text2 = "Download the macro from Direct Electron's GitHub page\n"
+ "(https://github.com/directelectron/imagej-macros).";
Dialog.create(title);
Dialog.addMessage(text1);
Dialog.addMessage(text2);
Dialog.show();
}
}
macro "-" {} //menu divider
// End: Direct Electron section