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SEACells on Custom Dataset — Memory Issue During model.fit()

Status: Open.

#81 In dpeerlab/SEACells;

· dacon06 opened on Aug 1, 2025

Is model.fit(min_iter=10, max_iter=1000) single-threaded? Can it be parallelized for faster

Status: Open.

#80 In dpeerlab/SEACells;

· wubaosheng opened on Jun 20, 2025

Importing SEACells not possible - error creating env

Status: Open.

#79 In dpeerlab/SEACells;

· MichaelS27A opened on Apr 23, 2025

SEACells Has no Attribute 'genescores'

Status: Open.

#78 In dpeerlab/SEACells;

· Branking24 opened on Apr 18, 2025

New version of SEACells no longer provides center of metacells?

Status: Open.

#75 In dpeerlab/SEACells;

· alifarhat40 opened on Feb 6, 2025

Error fitting model on Jupyter lab via HPC cluster

Status: Open.

#72 In dpeerlab/SEACells;

· li-xuyang28 opened on Sep 29, 2024

How to run SEACells efficiently on large-scale dataset

Status: Open.

#70 In dpeerlab/SEACells;

· koh2ng0 opened on Jul 22, 2024

What is the actual formula to construct the affinity kernel matrix?

Status: Open.

#69 In dpeerlab/SEACells;

· caodudu opened on Jul 15, 2024

CUDA error while running "model.fit"

Status: Open.

#66 In dpeerlab/SEACells;

· NekoClaviS opened on May 9, 2024

Spurious metacell

Status: Open.

#65 In dpeerlab/SEACells;

· yxsee opened on May 6, 2024

The data cannot be downloaded

Status: Open.

#63 In dpeerlab/SEACells;

· cfzgg opened on Apr 24, 2024

Handling metacell creation for rare cell types (<< 75 cells)

Status: Open.

#61 In dpeerlab/SEACells;

· uqzqiao opened on Apr 15, 2024