The TestingHistoryIncidence package utilizes cross-sectional survey data containing information on participants' testing history and diagnosis to estimate incidence.
To install the latest development version from the github repo run:
# If devtools is not installed:
# install.packages("devtools")
devtools::install_github("fellstat/TestingHistoryIncidence", dependencies="Suggests")
- For a more detailed description of what can be done with the
TestingHistoryIncidencepackage, see the introductory vignette. - A 15 minute video documenting the various options of the UI and how to use them is available here.
- See the wiki guide for the interface here.
A user interface to the methods is provided in the package, and can be launched locally with
library(TestingHistoryIncidence)
shiny_testing_history()
Privacy notice: the application processes individual-level HIV serostatus and diagnosis data. It is intended for local use only; it has no authentication and echoes uploaded data back to the browser, so it must not be deployed to a public or shared Shiny server with real participant data.