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Bathe BioNanoLab

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  1. pyDAEDALUS pyDAEDALUS Public

    This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami

    Python 20 10

  2. PERDIX PERDIX Public

    Forked from hmjeon/PERDIX

    Designer scaffolded DNA DX-based wireframe lattices

    Fortran 14 3

  3. athena athena Public

    A GUI for automated sequence design of wireframe scaffolded DNA origami

    Python 14 12

  4. Off-Lattice-CanDo Off-Lattice-CanDo Public

    Off-lattice finite element solver for DNA nanostructures.

    MATLAB 7 3

  5. HMM-Bayes HMM-Bayes Public

    MATLAB 7

  6. TALOS TALOS Public

    Forked from hmjeon/TALOS

    Designer scaffolded DNA 6HB-based wireframe nanoparticles

    Fortran 6 1

Repositories

Showing 10 of 19 repositories
  • pyDAEDALUS Public

    This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami

    lcbb/pyDAEDALUS's past year of commit activity
    Python 20 10 1 0 Updated May 11, 2026
  • BiosampleSQL Public

    Scripts used for sequencing analysis of "Enabling global-scale nucleic acid repositories through versatile, scalable biochemical selection from room-temperature archives" (DOI: https://doi.org/10.1101/2024.04.12.24305660)

    lcbb/BiosampleSQL's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 20, 2025
  • PRISM-CellProfiler-Analysis-Pipelines Public

    PRISM CellProfiler Analysis Pipelines

    lcbb/PRISM-CellProfiler-Analysis-Pipelines's past year of commit activity
    0 0 0 0 Updated Mar 20, 2023
  • rouls Public Forked from matthewfallan/rouls

    Rouskin Lab Tools for analyzing DMS-MaPseq data

    lcbb/rouls's past year of commit activity
    HTML 0 2 0 0 Updated Apr 12, 2022
  • ariadne Public Forked from matthewfallan/ariadne

    Analyze outputs from pyDAEDALUS.

    lcbb/ariadne's past year of commit activity
    Python 0 1 0 0 Updated Mar 13, 2022
  • 3dRnaScaffoldedWireframeOrigami Public Forked from matthewfallan/3dRnaScaffoldedWireframeOrigami

    Jupyter notebook for analyzing DMS-MaPseq data from DREEM, applied to 3D RNA-scaffolded wireframe origami.

    lcbb/3dRnaScaffoldedWireframeOrigami's past year of commit activity
    PostScript 0 1 0 0 Updated Feb 3, 2022
  • athena Public

    A GUI for automated sequence design of wireframe scaffolded DNA origami

    lcbb/athena's past year of commit activity
    Python 14 12 9 0 Updated Nov 3, 2021
  • DNA-Memory-Blocks Public
    lcbb/DNA-Memory-Blocks's past year of commit activity
    MATLAB 4 GPL-3.0 1 0 0 Updated Mar 5, 2021
  • HMM-Bayes Public
    lcbb/HMM-Bayes's past year of commit activity
    MATLAB 7 0 1 0 Updated Feb 4, 2021
  • MSD-Bayes Public
    lcbb/MSD-Bayes's past year of commit activity
    MATLAB 2 0 0 0 Updated Feb 4, 2021
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