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fix #12426#12427

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SimHolz wants to merge 1 commit into
nf-core:masterfrom
SimHolz:patch-1
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fix #12426#12427
SimHolz wants to merge 1 commit into
nf-core:masterfrom
SimHolz:patch-1

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@SimHolz

@SimHolz SimHolz commented Jul 24, 2026

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This PR closes #12426

I was not sure whether accepting *.fq.gz as output will break things down the line (which would be another option to fix this bug), therefore I made sure to always return *.fastq.gz

always return fastq.gz even if input is fq.gz
@mashehu

mashehu commented Jul 24, 2026

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Please join the github org via the slack channel so the CI runs for you.

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seqtk_sample error with *.fq.gz files

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