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Add manifest.diagram to nextflow.config - #112

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vagkaratzas merged 1 commit into
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metro-maps
Sep 14, 2026
Merged

vagkaratzas merged 1 commit into
devfrom
metro-maps

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@ewels

@ewels ewels commented Sep 11, 2026

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Adds the new manifest.diagram config attribute, pointing at the pipeline overview diagram.

See nf-core/tools#4460 for background: manifest.diagram gives a canonical location for the metro map, so that downstream consumers can find it. We'll use it for the nf-core website soon, for example. The new config option won't be released until Nextflow 26.10, but older versions ignore unknown manifest fields, so it's safe to set in any pipeline today.

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nf-core pipelines lint overall result: Passed ✅

Posted for pipeline commit 3b9a20b

+| ✅ 233 tests passed       |+
#| ❔  10 tests were ignored |#
Details

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/ci.yml
  • files_exist - File is ignored: conf/igenomes.config
  • files_exist - File is ignored: conf/igenomes_ignored.config
  • files_exist - File is ignored: .github/workflows/linting_comment.yml
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/branch.yml
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/nf-core-proteinannotator_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_dark.png

✅ Tests passed:

Run details

  • nf-core/tools version 4.1.0
  • Run at 2026-09-11 15:55:00

@vagkaratzas
vagkaratzas merged commit 3ca16b5 into dev Sep 14, 2026
21 checks passed
@vagkaratzas
vagkaratzas deleted the metro-maps branch September 14, 2026 08:29
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2 participants