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Add basePackages to container metadata - #4448

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Add basePackages to container metadata#4448
matthdsm wants to merge 3 commits into
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containers/add_gzip

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Added basePackages to container configuration, including procps (default) and gzip (for singularity images)

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

mashehu and others added 2 commits July 29, 2026 16:04
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Added basePackages to container configuration, including procps (default) and gzip (for singularity images)
@matthdsm

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xref seqeralabs/wave#1114

@matthdsm
matthdsm changed the base branch from main to dev August 19, 2026 09:12
@matthdsm matthdsm closed this Aug 19, 2026
@codecov

codecov Bot commented Aug 19, 2026

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Codecov Report

❌ Patch coverage is 76.57852% with 434 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.17%. Comparing base (ae4951a) to head (3fbceb2).
⚠️ Report is 167 commits behind head on dev.

Files with missing lines Patch % Lines
nf_core/modules/containers.py 77.99% 103 Missing ⚠️
nf_core/__main__.py 45.74% 51 Missing ⚠️
nf_core/commands_modules.py 0.00% 49 Missing ⚠️
nf_core/github_api.py 66.37% 38 Missing ⚠️
nf_core/modules/lint/module_containers.py 71.20% 36 Missing ⚠️
nf_core/modules/modules_utils.py 77.06% 25 Missing ⚠️
nf_core/pipelines/download/singularity.py 66.15% 22 Missing ⚠️
nf_core/components/nfcore_component.py 67.24% 19 Missing ⚠️
nf_core/modules/bump_versions.py 82.02% 16 Missing ⚠️
nf_core/modules/lint/environment_yml.py 82.25% 11 Missing ⚠️
... and 21 more

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@matthdsm
matthdsm deleted the containers/add_gzip branch August 19, 2026 09:15
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2 participants