Bump the github-actions group across 1 directory with 2 updates

[dependabot]

Bumps the github-actions group with 2 updates in the / directory: r-lib/actions/setup-r and github/codeql-action/upload-sarif.

Updates r-lib/actions/setup-r from 2.12.1 to 2.13.0

Changelog

Sourced from r-lib/actions/setup-r's changelog.

v2.13.0 (2026-08028)

• [setup-r] now retries r-hub.io HTTP failures (#1088, @​nbenn).

• [setup-r] now sets the correct RTOOLS environment variables on aarch64 Windows (@​vjymisal0, #1104).

• [setup-r] keep repositories if they are set by the build. E.g. aarch64 Windows builds now set them (@​jeroen, #1101).

• [setup-r] now retries transient failures when resolving the R version from api.r-hub.io, rather than failing the job on the first timeout or server error (@​nbenn, #1086).

• [setup-r-dependencies] now switches back to classic sudo, if available, on Linux. This fixes installing pak on Ubuntu 26.04 runners (@​jeroen, #1096).

v2.12.1 (2026-06-23)

• [setup-r] now avoids a warning about an url.parse() deprecation (#1074).

• [setup-r-dependencies] now uses quarto-dev/quarto-actions v2.2.0 (@​jdblischak, #1076).

• Examples: test-coverage.yaml now uses codecov/codecov-action v7 (@​shikokuchuo, #1081).

• New example claude-investigate.yaml workflow (@​DavisVaughan, #1084).

v2.12.0 (2026-04-29)

• All node.js actions use node 24 now. Relatedly, all example workflows use recent versions of actions that use node 24.

• [setup-r] now uses use-public-rspm: true by default on Linux and Windows. macOS binaries require further opt-in with use-public-rspm: always.

• It is now possible to require actions to be pinned to a full-length commit SHA in repositories using r-lib/actions (#1070).

• [setup-pandoc][setup-r-dependencies] now default to Pandoc version 3.8.3.

• [setup-r-dependencies] now includes the R architecture in the cache key, so caches for macos-15 (Apple Silicon) and macos-15-intel (Rosetta/x86_64) no longer collide (#1035).

... (truncated)

Commits

• 465b7d8 NEWS for 2.13.0 (#1105)
• d06a540 [setup-r] retry transient r-hub.io request failures (#1088)
• ed9aa85 fix(setup-r): export correct RTOOLS HOME env vars on Windows ARM64 and x64 (#...
• c86f32c setup-r-dependencies: set JAVA_HOME on Windows runners from Java 21 env vars ...
• 2a66450 setup-r-dependencies: switch back to classic sudo on runners with sudo-rs (#1...
• 5cc1f0d Fix minor typo (#1098)
• 33d09fb fix: Remove stray ::group:: (#1103)
• aae88a2 Special-case CRAN mirror for Windows ARM64 (#1101)
• b7484da [setup-r] Support installing RTools without installing R (#1093)
• See full diff in compare view

Updates github/codeql-action/upload-sarif from 4.37.7 to 4.37.9

Release notes

Sourced from github/codeql-action/upload-sarif's releases.

v4.37.9

• Update default CodeQL bundle version to 2.26.4. #4106

v4.37.8

No user facing changes.

Changelog

Sourced from github/codeql-action/upload-sarif's changelog.

CodeQL Action Changelog

See the releases page for the relevant changes to the CodeQL CLI and language packs.

[UNRELEASED]

• The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native linux-arm64 CodeQL bundle when available. #4072

4.37.9 - 26 Aug 2026

• Update default CodeQL bundle version to 2.26.4. #4106

4.37.8 - 21 Aug 2026

No user facing changes.

4.37.7 - 13 Aug 2026

• Update default CodeQL bundle version to 2.26.3. #4085

4.37.6 - 04 Aug 2026

• Changed the default filepath for the new remote file address format that was introduced in CodeQL Action 4.37.0 / 3.37.0 to .github/codeql-config.yml to align it with the suggested path that is used elsewhere. #4070

4.37.5 - 03 Aug 2026

• Fixed a bug where a network error while streaming the download of the CodeQL bundle could terminate the init Action instead of falling back to downloading the bundle before extracting it. #4061

4.37.4 - 29 Jul 2026

• This version of the CodeQL Action adds support for the tools input for the codeql-action/init step to be specified using a github-codeql-tools repository property. This feature will gradually be rolled out following the release of this version. Once rolled out, this allows for the CodeQL CLI version that is used in GitHub-managed workflows, such as Default Setup, to be set to a custom value. For example, customers who run into issues with rate limits when a new CodeQL CLI version is released can set the value to toolcache to always use the CodeQL CLI version that is available in the runner toolcache. For Advanced Setup workflows, the value provided for tools in the workflow definition always takes precedence unless the value of the repository property starts with !. #4037
• Update default CodeQL bundle version to 2.26.2. #4051

4.37.3 - 22 Jul 2026

No user facing changes.

4.37.2 - 21 Jul 2026

• The new address format for the config-file input that was introduced in CodeQL Action 4.37.0 is now enabled by default. In addition to the format described there, the remote= prefix can now be used to explicitly indicate that the input refers to a remote file. All previous input formats continue to be accepted as well. #4023
• The CodeQL Action can now make use of configured private registries in Default Setup to retrieve CodeQL configuration files from remote repositories that require authentication. This will allow customers to store their CodeQL configuration in a single repository that can then be referenced by Default Setup workflows in other repositories. We expect to roll this and other, related changes out to everyone in July. #4007

4.37.1 - 16 Jul 2026

• Upcoming breaking change: Add a deprecation warning for customers using CodeQL version 2.20.6 and earlier. These versions of CodeQL were discontinued on 1 July 2026 alongside GitHub Enterprise Server 3.16, and will be unsupported by the next minor release of the CodeQL Action. #3956
• Update default CodeQL bundle version to 2.26.1. #4019

4.37.0 - 08 Jul 2026

• Update default CodeQL bundle version to 2.26.0. #3995

... (truncated)

Commits

• cdf488f Merge pull request #4107 from github/update-v4.37.9-920ba7cd1
• 7243f38 Update changelog for v4.37.9
• 920ba7c Merge pull request #4106 from github/update-bundle/codeql-bundle-v2.26.4
• ecfa6e1 Add changelog note
• adcdf4a Update default bundle to codeql-bundle-v2.26.4
• 486fec2 Merge pull request #4099 from github/update-supported-enterprise-server-versions
• 134624c Merge pull request #4101 from github/dependabot/npm_and_yarn/npm-minor-457d82...
• ff43db8 Merge pull request #4103 from github/mergeback/v4.37.8-to-main-db488dde
• 4605e03 Rebuild
• 099c869 Update changelog and version after v4.37.8
• Additional commits viewable in compare view

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[dependabot]

Looks like these dependencies are updatable in another way, so this is no longer needed.