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CLI docs: Update for v0.40.0 - #1810

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CLI docs: Update for v0.40.0#1810
seqeralabs-docs-app[bot] wants to merge 4 commits into
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cli-docs-v0.40.0

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CLI documentation update for v0.40.0

This draft PR was generated from the verified tw-jar.jar release asset. Raw metadata is attached to the workflow run and is not committed to the repository.

Resolved CLI changes

  • Visible commands: 181 → 181
  • Added commands: 0
  • Removed commands: 0
  • Commands with changed descriptions: 0
  • Commands with changed positional arguments: 0
  • Added, removed, or changed options: 31

Option changes

  • tw actions add github: added --nextflow-version
  • tw actions add github: added --output-dir
  • tw actions add github: added --syntax-parser
  • tw actions add tower: added --nextflow-version
  • tw actions add tower: added --output-dir
  • tw actions add tower: added --syntax-parser
  • tw actions update: added --nextflow-version
  • tw actions update: added --output-dir
  • tw actions update: added --syntax-parser
  • tw compute-envs add aws-batch forge: added --secrets-kms-key
  • tw compute-envs add aws-batch manual: added --secrets-kms-key
  • tw compute-envs add aws-cloud: added --secrets-kms-key
  • tw compute-envs add google-cloud: added --network
  • tw compute-envs add google-cloud: added --network-tags
  • tw compute-envs add google-cloud: added --subnetworks
  • tw compute-envs add google-cloud: added --use-private-address
  • tw data-links download: added --silent
  • tw data-links upload: added --concurrency
  • tw data-links upload: added --silent
  • tw launch: added --nextflow-version
  • tw launch: added --output-dir
  • tw launch: added --syntax-parser
  • tw pipelines add: added --nextflow-version
  • tw pipelines add: added --output-dir
  • tw pipelines add: added --syntax-parser
  • tw pipelines update: added --nextflow-version
  • tw pipelines update: added --output-dir
  • tw pipelines update: added --syntax-parser
  • tw runs relaunch: added --nextflow-version
  • tw runs relaunch: added --output-dir
  • tw runs relaunch: added --syntax-parser

Required review

  • Confirm generated command and option changes against release notes and tw ... --help.
  • Update or remove overlays affected by renamed or removed commands.
  • Add conceptual guidance or examples for new behavior; do not infer unsupported examples.
  • Check the command index and sidebar placement for new top-level commands.
  • Build the Platform CLI docset and inspect the preview.

Use .claude/skills/review-cli-docs-release/SKILL.md for the evidence and inference workflow.

christopher-hakkaart and others added 2 commits September 2, 2026 16:37
tower-cli releases are now compiled for Java 25 (class file version 69),
so javac 21 fails with 'cannot access Tower' and the update-cli-docs
workflow has failed on every dispatch since mid-August. Bump the
setup-java pin and the local reproduction requirement to match.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
@seqeralabs-docs-app seqeralabs-docs-app Bot added documentation Improvements or additions to documentation cli auto-generated labels Sep 2, 2026
@justinegeffen
justinegeffen marked this pull request as ready for review September 2, 2026 18:07
Base automatically changed from fix/cli-docs-java-25 to master September 2, 2026 23:11
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