Update `batch_single_subject.sh` for the 2025 SCT Course - #33

Merged

joshuacwnewton merged 22 commits into

jn/update-for-2025-sct-course

Dec 4, 2025

Commits on Nov 18, 2025

Temporarily turn off PR trigger on workflows
joshuacwnewton
committed
5ca1c2a
Add GHA workflow to diff slides with batch script
joshuacwnewton
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bd48328

Commits on Nov 19, 2025

Replace `sct_label_vertebrae` with disc labels from `totalspineseg`
joshuacwnewton
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33fcc22
Replace `sct_deepseg_gm` with `sct_deepseg graymatter`
joshuacwnewton
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a6d80ca
Replace `sct_deepseg_sc` with `sct_deepseg spinalcord`
joshuacwnewton
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06c0161
Add missing lumbar `sct_qc` command
joshuacwnewton
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b31a5bd
Uncomment `sct_analyze_lesion -f` command
joshuacwnewton
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bd6c4c1
Add space to commented-out `sct_label_utils` command
joshuacwnewton
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0eb1aec
Add new `sct_compute_ascor` command
joshuacwnewton
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4ab8bbc
Temporarily commit course text to make testing easier
joshuacwnewton
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53665c3
Revert "Temporarily commit course text to make testing easier"
joshuacwnewton
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3c42572
Revert "Temporarily turn off PR trigger on workflows"
joshuacwnewton
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bfe9286
Fix `-step1-only` syntax
joshuacwnewton
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c98f50b
`gmseg` -> `gm_seg` to match new `graymatter` output
joshuacwnewton
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8812617
`batch_single_subject.sh`: Fix `aSCOR` typo (`-1` -> `1`)
joshuacwnewton
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cd149da
`batch_single_subject.sh`: Revert back to `_gmseg`
joshuacwnewton
committed
60ebdeb

Commits on Nov 20, 2025

Commits on Nov 28, 2025

Commits on Dec 2, 2025