ci: migrate R-CMD-check to the org reusable workflow - #42
Closed
eliotmcintire wants to merge 48 commits into
Closed
Conversation
Fixed issue with NA values in raster
This reverts commit 56a5852.
Without a `codecov: branch:` setting, Codecov falls back to `master`. This repo's default branch is `main` and `master` does not exist, so the repo total was computed from nothing and read far below the real figure. SpaDES.tools already carried this fix; propagating it to the rest of the packages whose default branch is main. Applied to both main and development so the branches do not drift. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Replaces this repo's hand-rolled matrix with a thin caller, so third-party action versions, system dependencies, caching and the check itself are maintained in one place instead of 17. Bumping actions/checkout there now updates every repo at once. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_012DVjmY3im9Xak7tXLSMGCa
The org concurrency budget is shared across every PredictiveEcology repo and is the binding constraint on getting work through. These legs added R versions below the default matrix; testing older R is explicitly not worth the runner contention it causes. oldrel-N is relative, so the default matrix's floor still rises on its own with each R release -- no standing commitment to any particular old version. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_012DVjmY3im9Xak7tXLSMGCa
This reverts commit 5d04873.
This was referenced Sep 1, 2026
Contributor
Author
|
Superseded by #44, which migrates all four workflows to the org reusable templates on current This branch is CONFLICTING, covers three of the four workflows (leaving |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Replaces this repo's hand-rolled matrix with a thin caller on
PredictiveEcology/actions/.github/workflows/R-CMD-check.yaml@main.58 → 27 lines.
Why
Third-party action versions, system dependencies, caching and the check itself were maintained separately in 17 repos. This repo was on
actions/checkout@v4; the org spread was v2/v4/v5/v6/v7. Node 20 deprecation warnings are the current symptom. Consolidated, bumping it once inactionsupdates every repo.Customizations preserved
OMP_THREAD_LIMIT=4via the newextra-envinput (thread contention in tests), andoldrel-2on Ubuntu and Windows viaextra-config.Dropped deliberately
Nothing. Gains the no-suggests leg.
Depends on PredictiveEcology/actions#27 (per-leg
extra-env).🤖 Generated with Claude Code
https://claude.ai/code/session_012DVjmY3im9Xak7tXLSMGCa