ci: migrate R-CMD-check to the org reusable workflow

.Rbuildignore

@@ -1,3 +1,4 @@
+^CRAN-RELEASE$
 ^.*\.Rproj$
 ^\.Rproj\.user$
 .*\.toc$
@@ -14,3 +15,4 @@
 ^stickers$
 vignettes/.*_cache$
 vignettes/.*\.log$
+^CRAN-SUBMISSION$

.github/workflows/R-CMD-check.yaml

@@ -1,57 +1,26 @@
+## Thin caller -- the matrix, system dependencies, caching, Drive staging
+## and the check itself all live in PredictiveEcology/actions. This file only
+## says which package to check and what it needs on top of the org defaults.
+##
+## Pinned @main deliberately: tags freeze and rot (v0.1/v0.2 kept the
+## ubuntugis PPA for months after the workflows rejected it). The actions repo
+## gates merges with its own self-test CI.
+
+name: R-CMD-check
+
 on:
   push:
-    branches:
-      - master
-      - development
+    branches: [master, development]
   pull_request:
-    branches:
-      - master
-      - development
-
-name: R-CMD-check
+    branches: [master, development]
 
 jobs:
   R-CMD-check:
-    if: "!contains(github.event.commits[0].message, '[skip-ci]')"
-    runs-on: ${{ matrix.config.os }}
-
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
-
-    strategy:
-      fail-fast: false
-      matrix:
-        config:
-          - {os: macOS-latest,   r: 'release'}
-          - {os: windows-latest, r: 'devel'}
-          - {os: windows-latest, r: 'release'}
-          - {os: windows-latest, r: 'oldrel-1'}
-          - {os: windows-latest, r: 'oldrel-2'}
-          - {os: ubuntu-latest,   r: 'devel'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
-          - {os: ubuntu-latest,   r: 'oldrel-2'}
-
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      OMP_THREAD_LIMIT: 4
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          Ncpus: 4
-          r-version: ${{ matrix.config.r }}
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: |
-            any::rcmdcheck
-
-      - uses: r-lib/actions/check-r-package@v2
-        with:
-          upload-snapshots: true
+    uses: PredictiveEcology/actions/.github/workflows/R-CMD-check.yaml@main
+    with:
+      extra-env: |
+        OMP_THREAD_LIMIT=4
+      ## Legs beyond the org default 8. These still work and are
+      ## deliberate back-compat coverage, so they are preserved.
+      extra-config: |
+        [{"config": {"os": "ubuntu-latest", "nosuggests": false, "r": "oldrel-2"}}, {"config": {"os": "windows-latest", "nosuggests": false, "r": "oldrel-2"}}]

.github/workflows/pkgdown.yaml

@@ -33,15 +33,8 @@ jobs:
           extra-packages: |
             any::pkgdown
             local::.
-            fastshp=?ignore
           needs: website
 
-      - name: Install additional package dependencies
-        run: |
-          pak::pkg_install("remotes")
-          remotes::install_github("s-u/fastshp")
-        shell: Rscript {0}
-
       - name: Build site
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}

.github/workflows/test-coverage.yaml

@@ -30,13 +30,6 @@ jobs:
         with:
           extra-packages: |
             any::covr
-            fastshp=?ignore
-
-      - name: Install additional package dependencies
-        run: |
-          pak::pkg_install("remotes")
-          remotes::install_github("s-u/fastshp")
-        shell: Rscript {0}
 
       - name: Test coverage
         run: covr::codecov()

CRAN-SUBMISSION

@@ -0,0 +1,4 @@
+Version: 1.0.2
+Date: 2023-07-01 22:43:07 UTC
+SHA:
+   497e75d89683284b04084660a85a29797d750da5

DESCRIPTION

@@ -11,8 +11,8 @@ Description: A high-level plotting system, compatible with `ggplot2` objects,
 URL:
     https://quickplot.predictiveecology.org,
     https://github.com/PredictiveEcology/quickPlot
-Version: 1.0.3
-Date: 2025-07-11
+Version: 1.0.4
+Date: 2025-07-14
 Authors@R: c(
     person("Eliot J B", "McIntire", email = "eliot.mcintire@canada.ca",
            role = c("aut", "cre"), comment=c(ORCID = "https://orcid.org/0000-0002-6914-8316")),
@@ -43,8 +43,6 @@ Suggests:
     sp,
     testthat (>= 1.0.2),
     withr
-Remotes:
-    tidyverse/ggplot2
 Additional_repositories: https://predictiveecology.r-universe.dev/
 Encoding: UTF-8
 Language: en-CA

NEWS.md

@@ -1,4 +1,4 @@
-# quickPlot (development version)
+# quickPlot 1.0.4
 
 * drop support for R <= 4.2;
 * remove defunct dependency `fastshp` (#35);

README.md

@@ -12,13 +12,6 @@ This has great utility for quick visualizations when testing code, with the key
 
 ## Installation
 
-The suggested package `fastshp` can be installed with:
-
-```{r}
-install.packages("fastshp", repos = "https://rforge.net", type = "source") or for binary:
-install.packages('fastshp', repos = 'https://PredictiveEcology.r-universe.dev')
-```
-
 Building packages from source requires the appropriate development libraries for your operating system (*e.g.*, Windows users should install [Rtools](https://cran.r-project.org/bin/windows/Rtools/)).
 
 ### Current stable release

codecov.yml

@@ -1,3 +1,9 @@
+codecov:
+  ## This repo's default branch is `main`; without this Codecov falls back to
+  ## `master`, which does not exist here, so the repo total is computed from
+  ## nothing and reads far below the real figure.
+  branch: main
+
 comment: false
 
 coverage:

cran-comments.md

@@ -1,27 +1,25 @@
 ## Updated release
 
-This is a medium update that further deals with migration to `terra` and `sf`, and removes `rgdal`, `rgeos`, and `maptools`. 
+This is an update that is required due to the changes in ggplot2 V4.0 that is coming to CRAN.
 
 ## Test environments
 
 ### GitHub Actions
 - os: macOS-latest,   r: 'release'
 - os: windows-latest, r: 'devel'
-- os: windows-latest, r: 'latest'
-.- os: windows-latest, r: 'oldrel'
+- os: windows-latest, r: 'release'
+- os: windows-latest, r: 'oldrel1'
+- os: windows-latest, r: 'oldrel2'
 - os: ubuntu-20.04,   r: 'devel', 
 - os: ubuntu-20.04,   r: 'release'
-- os: ubuntu-20.04,   r: 'oldrel'
+- os: ubuntu-20.04,   r: 'oldrel1'
+- os: ubuntu-20.04,   r: 'oldrel2'
 
-### Winbuilder
-* Windows                 (win-builder), R Under development (unstable) (2023-06-29 r84618 ucrt)
-* Windows                 (win-builder), 4.3.1 (2023-04-21 ucrt)
-* Windows                 (win-builder), 4.2.3 (2023-03-15 ucrt)
+### Local
+* Windows                 R version 4.5.0 (2025-04-11 ucrt)
+* Ubuntu                  4.4.3
 
 
-### R-hub
-* Linux (Debian, Fedora), MacOS, Windows
-
 ## R CMD check results
 
 There were no ERRORs nor WARNINGs nor NOTEs.
@@ -31,7 +29,7 @@ There were no ERRORs nor WARNINGs nor NOTEs.
 > revdepcheck::revdep_report_cran() ## update cran-comments with this output
 ## revdepcheck results
 
-We checked 2 reverse dependencies (0 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 4 reverse dependencies (4 from CRAN), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages